Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
Psed_3333KEGG: tbi:Tbis_0296 NLP/P60 protein. (678 aa)    
Predicted Functional Partners:
Psed_3332
PFAM: Major facilitator superfamily MFS-1; KEGG: sna:Snas_1047 major facilitator superfamily MFS_1.
  
    0.540
Psed_0615
Hypothetical protein; KEGG: mgm:Mmc1_2162 TPR repeat-containing protein.
 
  
 0.497
Psed_3331
Hypothetical protein.
       0.496
Psed_0329
KEGG: amd:AMED_0309 hypothetical protein.
  
  
 0.430
Psed_0451
KEGG: cbr:CBG02561 Hypothetical protein CBG02561.
  
  
 0.430
Psed_5176
KEGG: mil:ML5_0745 hypothetical protein.
  
  
 0.430
Psed_6611
KEGG: amd:AMED_3003 hypothetical protein.
  
  
 0.430
Psed_2736
KEGG: amd:AMED_1945 hypothetical protein.
  
     0.425
Psed_6434
KEGG: kva:Kvar_3050 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain.
 
     0.414
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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