STRINGSTRING
Psed_3333 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3333" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3333Hypothetical protein (678 aa)    
Predicted Functional Partners:
Psed_1253
Thymidylate kinase (569 aa)
   
          0.777
Psed_1247
Haloacid dehalogenase (248 aa)
   
          0.739
Psed_6024
Hypothetical protein (264 aa)
   
          0.566
Psed_3332
Major facilitator superfamily protein (404 aa)
              0.565
Psed_2819
Type 12 methyltransferase (252 aa)
   
          0.565
Psed_3331
Hypothetical protein (67 aa)
              0.560
Psed_3675
Transcriptional regulator CdaR (407 aa)
   
          0.524
Psed_0287
Hypothetical protein (198 aa)
   
          0.522
Psed_3686
Hypothetical protein (309 aa)
   
          0.518
Psed_4210
Major facilitator superfamily protein (367 aa)
   
          0.515
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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