STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3338KEGG: sna:Snas_4544 transcriptional repressor, CopY family; manually curated; PFAM: Penicillinase repressor. (113 aa)    
Predicted Functional Partners:
Psed_3337
PFAM: Peptidase M48; KEGG: gob:Gobs_3608 peptidase M48 Ste24p.
 
    0.936
Psed_0565
PFAM: Heavy metal transport/detoxification protein; KEGG: gbr:Gbro_4238 heavy metal transport/detoxification protein.
 
  
 0.578
Psed_3339
ErfK/YbiS/YcfS/YnhG family protein; PFAM: YkuD domain; KEGG: amd:AMED_4234 putative secreted protein.
       0.511
Psed_4835
PFAM: Peptidase M48; KEGG: fri:FraEuI1c_2989 peptidase M48 Ste24p.
 
    0.501
Psed_1290
PFAM: Heavy metal transport/detoxification protein; KEGG: mmg:MTBMA_c01180 cation transport ATPase.
  
  
 0.486
Psed_1303
PFAM: Heavy metal transport/detoxification protein; KEGG: bae:BATR1942_14715 copper insertion chaperone and transporter component.
  
  
 0.486
Psed_6403
PFAM: Heavy metal transport/detoxification protein; KEGG: mil:ML5_0770 heavy metal transport/detoxification protein.
  
  
 0.486
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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