Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Psed_3402PFAM: ABC-2 type transporter; KEGG: ami:Amir_5163 ABC-2 type transporter. (261 aa)    
Predicted Functional Partners:
Psed_3401
Fe(3+)-transporting ATPase; PFAM: ABC transporter-like; KEGG: ami:Amir_5162 ABC transporter related; SMART: ATPase, AAA+ type, core.
 
  
 0.911
Psed_3403
Cytochrome oxidase assembly; PFAM: Heme A synthase/Protoheme IX farnesyltransferase; KEGG: ami:Amir_5168 cytochrome oxidase assembly.
 
   
 0.903
Psed_3400
KEGG: rop:ROP_69820 mannosyltransferase MptB.
 
   
 0.833
Psed_3399
PFAM: HTH transcriptional regulator, ArsR; KEGG: sen:SACE_2173 transcriptional regulator.
 
     0.586
Psed_4708
KEGG: ami:Amir_5887 GCN5-related N-acetyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase (GNAT) domain.
  
     0.545
Psed_3397
KEGG: sen:SACE_2175 FeS assembly protein; TIGRFAM: SUF system FeS cluster assembly, SufD; PFAM: SUF system FeS cluster assembly, SufBD.
     
 0.536
Psed_3398
KEGG: ami:Amir_5154 FeS assembly protein SufB; TIGRFAM: SUF system FeS cluster assembly, SufB; PFAM: SUF system FeS cluster assembly, SufBD.
     
 0.536
pup
Ubiquitin-like protein pup; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation.
  
     0.526
Psed_3846
Beta-lactamase domain protein; KEGG: svi:Svir_25780 Zn-dependent hydrolase, glyoxylase; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like.
  
     0.523
Psed_4465
Sulfate-transporting ATPase; PFAM: ABC transporter-like; KEGG: amd:AMED_6603 ABC transport system ATP-binding protein; SMART: ATPase, AAA+ type, core.
 
  
 0.485
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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