STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbpA-2Electron transport protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. (115 aa)    
Predicted Functional Partners:
Psed_3416
Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
 
     0.808
Psed_2758
Hypothetical protein; KEGG: ami:Amir_1371 response regulator receiver protein.
  
     0.680
whiA
Sporulation transcription regulator whiA; Involved in cell division and chromosome segregation.
 
     0.635
Psed_2933
PFAM: Protein of unknown function DUF164; KEGG: ami:Amir_0880 protein of unknown function DUF164.
  
     0.612
Psed_0315
KEGG: amd:AMED_4171 hypothetical protein.
  
     0.595
Psed_3414
KEGG: amd:AMED_1048 hypothetical protein.
       0.566
Psed_1064
PFAM: Domain of unknown function DUF304l; KEGG: amd:AMED_1101 hypothetical protein.
 
     0.534
Psed_2138
KEGG: ami:Amir_1328 putative transcriptional regulator, PucR family.
  
     0.529
Psed_2796
PFAM: Domain of unknown function DUF58; KEGG: ami:Amir_5777 protein of unknown function DUF58.
  
     0.509
Psed_2893
KEGG: svi:Svir_24100 hypothetical protein.
  
     0.480
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.