Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3545KEGG: sen:SACE_2050 secreted protein. (125 aa)    
Predicted Functional Partners:
Psed_3544
KEGG: amd:AMED_2712 hypothetical protein.
 
     0.941
Psed_3542
Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
       0.674
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.636
Psed_1861
KEGG: svi:Svir_11850 hypothetical protein.
  
     0.571
Psed_3546
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: svi:Svir_04710 RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.
       0.554
Psed_5200
Protein of unknown function DUF343; PFAM: Uncharacterised protein family UPF0434/Trm112; KEGG: amd:AMED_8014 hypothetical protein; Belongs to the UPF0434 family.
  
     0.540
mltG
Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
       0.532
Psed_0447
KEGG: ami:Amir_6841 hypothetical protein.
  
     0.524
Psed_5570
Geranylgeranyl reductase; KEGG: sen:SACE_6903 electron transfer oxidoreductase; TIGRFAM: Geranylgeranyl reductase, plant/prokaryotic; PFAM: FAD dependent oxidoreductase.
  
     0.467
Psed_5337
KEGG: amd:AMED_0795 hypothetical protein.
  
     0.452
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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