STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3564Putative transcriptional regulator, GntR family; KEGG: rop:ROP_63240 aminotransferase; PFAM: Aminotransferase, class I/classII. (417 aa)    
Predicted Functional Partners:
Psed_6682
Putative transcriptional regulator, GntR family; KEGG: amd:AMED_9357 aminotransferase AvtA; PFAM: Aminotransferase, class I/classII.
  
  
 
0.916
Psed_6011
Putative transcriptional regulator, GntR family; PFAM: Aminotransferase, class I/classII; KEGG: rsc:RCFBP_20493 transcriptional regulators containing a DNA-binding hth domain and an aminotransferase domain transcriptional regulator protein.
  
  
 
0.915
Psed_3566
Aspartate transaminase; KEGG: bts:Btus_0692 aminotransferase class I and II; PFAM: Aminotransferase, class I/classII.
  
 
0.785
Psed_3565
KEGG: aac:Aaci_2663 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type.
     
 0.759
Psed_3563
AAA ATPase central domain protein; KEGG: svi:Svir_15240 recombination factor protein RarA; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core.
  
    0.440
Psed_3567
Hypothetical protein.
       0.415
Psed_2932
NGG1p interacting factor 3 protein, NIF3; KEGG: ami:Amir_0879 protein of unknown function DUF34; TIGRFAM: NGG1p interacting factor 3, NIF3; PFAM: NGG1p interacting factor 3, NIF3; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
  
    0.407
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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