STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3597PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: stp:Strop_1547 GCN5-related N-acetyltransferase. (178 aa)    
Predicted Functional Partners:
Psed_3598
Hypothetical protein.
       0.605
Psed_3596
KEGG: pop:POPTR_571331 hypothetical protein.
       0.493
Psed_5724
KEGG: amd:AMED_2491 histidine kinase-like ATPase containing nitrate/nitrite sensor domain; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; HAMP linker domain.
  
     0.444
Psed_3138
PFAM: Protein of unknown function DUF742; KEGG: sen:SACE_0559 hypothetical protein.
  
     0.442
Psed_5725
Roadblock/LC7 family protein; KEGG: svi:Svir_24600 hypothetical protein; PFAM: Dynein light chain-related; SMART: Dynein light chain-related.
  
     0.438
whiB
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.436
Psed_4053
Hypothetical protein; KEGG: tbi:Tbis_0974 histidine kinase.
  
     0.412
Psed_3982
KEGG: ami:Amir_1468 histone deacetylase superfamily; PFAM: Histone deacetylase superfamily.
  
  
 0.409
Psed_6663
Transcriptional regulator, PadR-like family; PFAM: Transcription regulator PadR N-terminal-like; KEGG: ami:Amir_7032 transcriptional regulator, PadR-like family.
 
     0.406
Psed_3599
UPF0082 protein yeeN; TIGRFAM: Protein of unknown function DUF28; HAMAP: Protein of unknown function DUF28; KEGG: sma:SAV_6832 hypothetical protein; PFAM: Protein of unknown function DUF28.
       0.405
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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