STRINGSTRING
Psed_3597 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3597" - GCN5-like N-acetyltransferase in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3597GCN5-like N-acetyltransferase (178 aa)    
Predicted Functional Partners:
Psed_4583
Hypothetical protein (142 aa)
   
          0.702
Psed_3598
Hypothetical protein (128 aa)
              0.676
trmD
tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs (261 aa)
 
            0.662
Psed_4064
Hypothetical protein (139 aa)
   
          0.565
Psed_5701
Hypothetical protein (144 aa)
   
          0.564
Psed_3596
Hypothetical protein (302 aa)
              0.552
Psed_5724
Histidine kinase (1778 aa)
   
          0.541
Psed_1583
F420-dependent protein (130 aa)
   
          0.534
Psed_6234
Luciferase-like protein (356 aa)
   
          0.494
Psed_3813
F420-dependent oxidoreductase (331 aa)
   
          0.490
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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