STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3655Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: cai:Caci_1662 transcriptional regulator, TetR family. (206 aa)    
Predicted Functional Partners:
Psed_3656
KEGG: kra:Krad_3604 hypothetical protein.
       0.631
Psed_3654
PFAM: Monooxygenase, FAD-binding; KEGG: amd:AMED_4222 FAD-dependent oxidoreductase.
 
     0.628
Psed_0238
Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: msm:MSMEG_0878 transcriptional regulator.
  
  
 0.593
Psed_0843
Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: fre:Franean1_2583 TetR family transcriptional regulator.
  
  
 0.549
Psed_1782
Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: swi:Swit_0760 TetR family transcriptional regulator.
  
  
 0.491
Psed_2660
Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: cwo:Cwoe_0256 transcriptional regulator, TetR family.
  
  
 0.480
Psed_4422
Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: fal:FRAAL4881 putative transcriptional regulator.
  
  
 0.478
Psed_2060
PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: cwo:Cwoe_0832 transcriptional regulator, TetR family.
  
  
 0.464
Psed_2078
PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: cwo:Cwoe_0832 transcriptional regulator, TetR family.
  
  
 0.457
Psed_3215
Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: mxa:MXAN_2145 TetR family transcriptional regulator.
  
  
 0.425
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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