STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3661PFAM: Domain of unknown function DUF397; KEGG: sro:Sros_5628 hypothetical protein. (104 aa)    
Predicted Functional Partners:
Psed_3660
Helix-turn-helix domain protein; SMART: Helix-turn-helix type 3; KEGG: sro:Sros_7488 hypothetical protein.
 
   
 0.888
Psed_0357
KEGG: mil:ML5_0071 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.
  
   
 0.781
Psed_3659
PFAM: Protein of unknown function DUF574; KEGG: sen:SACE_4240 hypothetical protein.
  
     0.771
Psed_4080
PFAM: Protein of unknown function DUF574; KEGG: saq:Sare_1317 hypothetical protein.
  
     0.762
Psed_3529
Helix-turn-helix domain protein; KEGG: ami:Amir_5247 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.
  
   
 0.746
Psed_2762
PFAM: Protein of unknown function DUF901; KEGG: ami:Amir_1379 protein of unknown function DUF901.
  
     0.659
Psed_0358
PFAM: Domain of unknown function DUF397; KEGG: svi:Svir_12060 protein of unknown function (DUF397).
  
     0.658
Psed_5724
KEGG: amd:AMED_2491 histidine kinase-like ATPase containing nitrate/nitrite sensor domain; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; HAMP linker domain.
  
     0.651
Psed_4053
Hypothetical protein; KEGG: tbi:Tbis_0974 histidine kinase.
  
     0.647
Psed_5726
PFAM: Protein of unknown function DUF742; KEGG: sen:SACE_0559 hypothetical protein.
  
     0.636
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.