STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3759PFAM: Major facilitator superfamily MFS-1; KEGG: acr:Acry_0452 major facilitator transporter. (466 aa)    
Predicted Functional Partners:
Psed_6443
PFAM: Major facilitator superfamily MFS-1; KEGG: rop:ROP_17540 MFS transporter.
  
   
 0.691
Psed_3070
PFAM: Major facilitator superfamily MFS-1; KEGG: rha:RHA1_ro03382 MFS superfamily tartrate symporter.
 
  
 0.664
Psed_3760
PFAM: Major facilitator superfamily MFS-1; KEGG: vdi:Vdis_1658 major facilitator superfamily protein.
 
    
0.571
Psed_4128
PFAM: Major facilitator superfamily MFS-1; KEGG: mta:Moth_2103 major facilitator transporter.
 
  
 0.546
Psed_3758
Transcriptional regulator, IclR family; KEGG: scb:SCAB_81001 repressor of aceBA operon; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal.
     
 0.438
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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