STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3811KEGG: cwo:Cwoe_0260 hypothetical protein. (255 aa)    
Predicted Functional Partners:
xerD
Tyrosine recombinase xerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
       0.709
Psed_0357
KEGG: mil:ML5_0071 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.
  
     0.595
Psed_5394
PFAM: Protein of unknown function DUF1707; KEGG: amd:AMED_0797 hypothetical protein.
 
  
 0.584
Psed_3661
PFAM: Domain of unknown function DUF397; KEGG: sro:Sros_5628 hypothetical protein.
  
     0.571
Psed_3660
Helix-turn-helix domain protein; SMART: Helix-turn-helix type 3; KEGG: sro:Sros_7488 hypothetical protein.
 
     0.544
Psed_3156
PFAM: Sulphate transporter/antisigma-factor antagonist STAS; KEGG: scb:SCAB_63591 hypothetical protein.
  
     0.539
Psed_5342
Putative signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Phage shock domain; KEGG: amd:AMED_0787 two-component system sensor kinase.
  
  
 0.534
Psed_0035
PFAM: TrwC relaxase; KEGG: kfl:Kfla_2190 TrwC relaxase.
  
     0.528
Psed_3603
PFAM: Branched-chain amino acid transport, AzlD; KEGG: tcu:Tcur_0680 branched-chain amino acid transport.
  
     0.518
Psed_4821
PFAM: Protein of unknown function DUF1707; KEGG: fal:FRAAL2404 hypothetical protein.
 
  
 0.515
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.