STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3868KEGG: mva:Mvan_0621 hypothetical protein. (172 aa)    
Predicted Functional Partners:
Psed_3869
KEGG: cai:Caci_8916 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2.
  
    0.789
Psed_5389
Secretion protein snm4; KEGG: sro:Sros_8100 hypothetical protein; TIGRFAM: Type VII secretion system protein EccD; PFAM: Type VII secretion system protein EccD.
  
    0.642
Psed_4036
KEGG: fre:Franean1_4793 hypothetical protein.
  
 
 0.574
Psed_4722
Hypothetical protein; KEGG: dgr:Dgri_GH10507 GH10507 gene product from transcript GH10507-RA.
  
 
 0.574
smc
Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.
  
 
 0.574
Psed_5297
KEGG: ami:Amir_6447 hypothetical protein.
  
 
 0.574
Psed_5614
KEGG: bcv:Bcav_0688 hypothetical protein.
  
 
 0.574
Psed_6486
TIGRFAM: Conserved hypothetical protein CHP02680; KEGG: sma:SAV_7224 hypothetical protein.
  
 
 0.574
coaE
Dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
       0.548
Psed_5267
Protein of unknown function DUF692; PFAM: Uncharacterised protein family UPF0276; KEGG: mau:Micau_4298 hypothetical protein.
   
    0.545
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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