STRINGSTRING
Psed_3897 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3897" - TetR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3897TetR family transcriptional regulator (213 aa)    
Predicted Functional Partners:
Psed_3899
o-succinylbenzoate--CoA ligase (511 aa)
 
          0.903
Psed_3898
3-oxoacyl-ACP reductase (263 aa)
 
          0.861
Psed_5168
Hypothetical protein (197 aa)
   
          0.680
Psed_0841
Hypothetical protein (121 aa)
   
          0.667
Psed_2095
Hypothetical protein (206 aa)
   
          0.625
Psed_1551
Hypothetical protein (200 aa)
   
          0.614
Psed_2645
Hypothetical protein (316 aa)
   
          0.586
Psed_3140
ArsR family transcriptional regulator (201 aa)
   
          0.562
Psed_3790
Luciferase-like protein (474 aa)
   
          0.536
Psed_3624
Hypothetical protein (131 aa)
   
          0.530
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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