STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3897Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: kfl:Kfla_6852 transcriptional regulator, TetR family. (213 aa)    
Predicted Functional Partners:
Psed_3898
KEGG: nml:Namu_4881 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR.
 
     0.839
Psed_3899
KEGG: rop:ROP_06490 putative fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase.
 
     0.830
Psed_2937
HNH endonuclease; KEGG: amd:AMED_5856 predicted HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease.
  
     0.444
Psed_0389
KEGG: htu:Htur_4265 hypothetical protein.
  
     0.443
Psed_6112
KEGG: kfl:Kfla_6806 putative phytochrome sensor protein.
  
     0.419
Psed_4495
KEGG: sen:SACE_3690 hypothetical protein.
  
     0.409
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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