Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4012KEGG: amd:AMED_8818 hypothetical protein. (132 aa)    
Predicted Functional Partners:
Psed_5120
KEGG: sen:SACE_0669 hypothetical protein.
  
     0.735
Psed_4747
PFAM: Abortive infection protein; KEGG: mbt:JTY_0677 putative integral membrane protein.
  
     0.717
Psed_4013
KEGG: mva:Mvan_1920 putative short chain dehydrogenase.
       0.709
Psed_1128
KEGG: kfl:Kfla_0387 hypothetical protein.
  
     0.698
Psed_6557
KEGG: svi:Svir_38140 hypothetical protein.
  
     0.698
Psed_3358
KEGG: svi:Svir_22310 hypothetical protein.
  
     0.689
Psed_4476
KEGG: ami:Amir_1257 hypothetical protein.
  
     0.688
Psed_0149
KEGG: amd:AMED_0129 hypothetical protein.
  
     0.664
Psed_6558
KEGG: sen:SACE_1599 hypothetical protein.
  
     0.662
Psed_0564
KEGG: svi:Svir_37150 hypothetical protein.
  
     0.659
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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