Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4064KEGG: amd:AMED_5931 hypothetical protein. (139 aa)    
Predicted Functional Partners:
Psed_5207
TIGRFAM: F420-0:gamma-glutamyl ligase; Coenzyme F420 biosynthesis protein FbiB, C-terminal; HAMAP: F420-0:gamma-glutamyl ligase; KEGG: nfa:nfa46200 F420-0--gamma-glutamyl ligase; PFAM: F420-0 gamma-glutamyl ligase-related; Nitroreductase-like.
 
   
 0.797
Psed_5208
TIGRFAM: LPPG:Fo 2-phospho-L-lactate transferase; HAMAP: LPPG:FO 2-phospho-L-lactate transferase; KEGG: sen:SACE_6466 LPPG:FO 2-phospho-L-lactate transferase; PFAM: LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052.
 
   
 0.790
Psed_4063
TIGRFAM: Trehalose synthase; KEGG: mkm:Mkms_0356 trehalose synthase.
       0.778
Psed_5113
KEGG: nda:Ndas_3206 putative F420-dependent oxidoreductase; TIGRFAM: F420-dependent oxidoreductase-predicted, Rv3520c; PFAM: Luciferase-like, subgroup.
  
   
 0.758
Psed_1331
TIGRFAM: LPPG:Fo 2-phospho-L-lactate transferase; HAMAP: LPPG:FO 2-phospho-L-lactate transferase; KEGG: rrs:RoseRS_1138 LPPG:FO 2-phospho-L-lactate transferase; PFAM: LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052.
 
   
 0.757
Psed_2378
F420-dependent oxidoreductase, G6PDH family; KEGG: amd:AMED_5210 coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase; TIGRFAM: Glucose-6-phosphate dehydrogenase-related, F420-dependent; PFAM: Luciferase-like, subgroup.
  
   
 0.755
Psed_3137
Putative F420-dependent oxidoreductase, MSMEG_2906 family; TIGRFAM: F420-dependent oxidoreductase, MSMEG2906; KEGG: svi:Svir_27940 flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase.
  
   
 0.753
Psed_5506
PFAM: Luciferase-like, subgroup; KEGG: hsl:OE2918F alkanesulfonate monooxygenase.
  
   
 0.741
Psed_4225
PFAM: Luciferase-like, subgroup; KEGG: amd:AMED_7646 FMN-dependent monooxygenase.
  
   
 0.735
Psed_4433
PFAM: Luciferase-like, subgroup; KEGG: sgr:SGR_1577 putative monooxygenase.
  
   
 0.732
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (6%) [HD]