STRINGSTRING
Psed_4151 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4151" - GntR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4151GntR family transcriptional regulator (233 aa)    
Predicted Functional Partners:
Psed_2626
GntR family transcriptional regulator (219 aa)
   
          0.778
Psed_3919
GntR family transcriptional regulator (232 aa)
   
          0.776
Psed_2548
GntR family transcriptional regulator (246 aa)
   
   
  0.736
Psed_1543
GntR family transcriptional regulator (259 aa)
   
   
  0.725
Psed_4913
GntR family transcriptional regulator (255 aa)
   
   
  0.717
Psed_4150
3-isopropylmalate dehydrogenase (353 aa)
         
  0.695
Psed_0346
GntR family transcriptional regulator (220 aa)
   
          0.674
Psed_2753
GntR family transcriptional regulator (261 aa)
   
   
  0.669
Psed_3766
GntR family transcriptional regulator (233 aa)
   
   
  0.605
Psed_0684
GntR family transcriptional regulator (260 aa)
   
   
  0.585
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (8%) [HD]