Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psed_4166Chitin deacetylase; KEGG: bbr:BB0695 putative polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; Cupin 2, conserved barrel. (425 aa)    
Predicted Functional Partners:
Psed_1879
TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: gob:Gobs_0418 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase.
  
  
 0.820
ilvD-3
HAMAP: Dihydroxy-acid dehydratase; KEGG: rxy:Rxyl_1326 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; Belongs to the IlvD/Edd family.
       0.780
Psed_4167
PFAM: Alpha/beta hydrolase fold-1; KEGG: cti:RALTA_A2298 putative hydrolase; putative 3-oxoadipate enol-lactonase.
  
    0.779
Psed_4168
KEGG: pth:PTH_1335 citrate lyase beta subunit; PFAM: Aldehyde-lyase domain; Belongs to the HpcH/HpaI aldolase family.
       0.779
Psed_3001
Non-ribosomal peptide synthetase domain protein; SMART: Polyketide synthase, phosphopantetheine-binding; TIGRFAM: Non-ribosomal peptide synthetase C-terminal; Amino acid adenylation; Diaminobutyrate-2-oxoglutarate transaminase; KEGG: aau:AAur_pTC10155 putative non-ribosomal peptide synthetase; PFAM: AMP-dependent synthetase/ligase; Phosphopantetheine-binding; Bacterial transferase hexapeptide repeat; Aminotransferase class-III.
  
  
 0.703
Psed_4172
KEGG: nca:Noca_0099 ABC-type sugar transport system periplasmic component-like.
       0.701
Psed_4170
ABC-type transporter, integral membrane subunit; PFAM: ABC transporter permease; KEGG: nca:Noca_0101 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.700
Psed_4171
Monosaccharide-transporting ATPase; PFAM: ABC transporter-like; KEGG: nca:Noca_0100 ABC transporter related; SMART: ATPase, AAA+ type, core.
       0.700
Psed_1767
Hydroxyisourate hydrolase; KEGG: fra:Francci3_0842 transthyretin; TIGRFAM: Hydroxyisourate hydrolase; PFAM: Transthyretin/hydroxyisourate hydrolase; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
  
 0.677
Psed_4173
PFAM: Isochorismatase-like; KEGG: cag:Cagg_3089 N-carbamoylsarcosine amidase.
       0.631
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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