Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psed_4232PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: mil:ML5_3028 short-chain dehydrogenase/reductase sdr. (329 aa)    
Predicted Functional Partners:
Psed_4231
KEGG: cwo:Cwoe_0784 PGAP1 family protein.
  
    0.664
Psed_4229
Nitrate reductase; KEGG: nda:Ndas_4662 molybdopterin oxidoreductase; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding domain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
  
 0.514
Psed_6481
KEGG: nar:Saro_1475 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; Belongs to the CoA-transferase III family.
 
 
 
 0.500
Psed_4230
KEGG: amd:AMED_6557 hypothetical protein.
       0.482
Psed_2590
3-oxoacyl-(acyl-carrier-protein) reductase; KEGG: tfu:Tfu_1466 short-chain alcohol dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR.
 
 
 
 0.465
Psed_2556
KEGG: lch:Lcho_1200 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR.
 
 
 
 0.460
Psed_2684
KEGG: cag:Cagg_2751 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR.
 
 
 
 0.458
Psed_4127
3-oxoacyl-(acyl-carrier-protein) reductase; KEGG: bbe:BBR47_10970 glucose 1-dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR.
 
 
 
 0.437
Psed_4130
KEGG: cak:Caul_1939 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR.
 
 
 
 0.437
Psed_2430
PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: bxe:Bxe_C0850 putative short-chain dehydrogenase/reductase; SMART: Polyketide synthase/Fatty acid synthase, KR.
 
 
 
 0.428
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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