Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Psed_2324 | Psed_4259 | Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS; PFAM: Sporulation stage II, protein E C-terminal; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-4; Signal transduction response regulator, receiver domain; PAS fold-3; GAF; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: gob:Gobs_0116 multi-sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; PAC motif; Si [...] | Protein of unknown function UPF0118; PFAM: Uncharacterised protein family UPF0118; KEGG: amd:AMED_3910 hypothetical protein. | 0.525 |
Psed_4259 | Psed_2324 | Protein of unknown function UPF0118; PFAM: Uncharacterised protein family UPF0118; KEGG: amd:AMED_3910 hypothetical protein. | Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS; PFAM: Sporulation stage II, protein E C-terminal; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-4; Signal transduction response regulator, receiver domain; PAS fold-3; GAF; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: gob:Gobs_0116 multi-sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; PAC motif; Si [...] | 0.525 |
Psed_4259 | Psed_4260 | Protein of unknown function UPF0118; PFAM: Uncharacterised protein family UPF0118; KEGG: amd:AMED_3910 hypothetical protein. | PFAM: Diacylglycerol kinase, catalytic domain; KEGG: fal:FRAAL5417 hypothetical protein. | 0.612 |
Psed_4259 | Psed_4261 | Protein of unknown function UPF0118; PFAM: Uncharacterised protein family UPF0118; KEGG: amd:AMED_3910 hypothetical protein. | KEGG: sen:SACE_3236 integral membrane protein. | 0.588 |
Psed_4259 | Psed_4262 | Protein of unknown function UPF0118; PFAM: Uncharacterised protein family UPF0118; KEGG: amd:AMED_3910 hypothetical protein. | RDD domain containing protein; PFAM: RDD; KEGG: rop:ROP_35210 hypothetical membrane protein. | 0.436 |
Psed_4260 | Psed_4259 | PFAM: Diacylglycerol kinase, catalytic domain; KEGG: fal:FRAAL5417 hypothetical protein. | Protein of unknown function UPF0118; PFAM: Uncharacterised protein family UPF0118; KEGG: amd:AMED_3910 hypothetical protein. | 0.612 |
Psed_4260 | Psed_4261 | PFAM: Diacylglycerol kinase, catalytic domain; KEGG: fal:FRAAL5417 hypothetical protein. | KEGG: sen:SACE_3236 integral membrane protein. | 0.705 |
Psed_4260 | Psed_4262 | PFAM: Diacylglycerol kinase, catalytic domain; KEGG: fal:FRAAL5417 hypothetical protein. | RDD domain containing protein; PFAM: RDD; KEGG: rop:ROP_35210 hypothetical membrane protein. | 0.642 |
Psed_4261 | Psed_4259 | KEGG: sen:SACE_3236 integral membrane protein. | Protein of unknown function UPF0118; PFAM: Uncharacterised protein family UPF0118; KEGG: amd:AMED_3910 hypothetical protein. | 0.588 |
Psed_4261 | Psed_4260 | KEGG: sen:SACE_3236 integral membrane protein. | PFAM: Diacylglycerol kinase, catalytic domain; KEGG: fal:FRAAL5417 hypothetical protein. | 0.705 |
Psed_4261 | Psed_4262 | KEGG: sen:SACE_3236 integral membrane protein. | RDD domain containing protein; PFAM: RDD; KEGG: rop:ROP_35210 hypothetical membrane protein. | 0.891 |
Psed_4262 | Psed_4259 | RDD domain containing protein; PFAM: RDD; KEGG: rop:ROP_35210 hypothetical membrane protein. | Protein of unknown function UPF0118; PFAM: Uncharacterised protein family UPF0118; KEGG: amd:AMED_3910 hypothetical protein. | 0.436 |
Psed_4262 | Psed_4260 | RDD domain containing protein; PFAM: RDD; KEGG: rop:ROP_35210 hypothetical membrane protein. | PFAM: Diacylglycerol kinase, catalytic domain; KEGG: fal:FRAAL5417 hypothetical protein. | 0.642 |
Psed_4262 | Psed_4261 | RDD domain containing protein; PFAM: RDD; KEGG: rop:ROP_35210 hypothetical membrane protein. | KEGG: sen:SACE_3236 integral membrane protein. | 0.891 |