Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
Psed_4331PFAM: Protein of unknown function DUF955; KEGG: sgr:SGR_7016t hypothetical protein. (330 aa)    
Predicted Functional Partners:
Psed_4330
KEGG: fal:FRAAL1382 hypothetical protein.
       0.686
Psed_4329
KEGG: fal:FRAAL1383 hypothetical protein.
       0.662
Psed_4332
KEGG: fra:Francci3_0884 hypothetical protein.
       0.565
Psed_4334
KEGG: sjp:SJA_C1-20390 hypothetical protein.
       0.565
Psed_4333
PFAM: UBA/THIF-type NAD/FAD binding fold; KEGG: rpx:Rpdx1_2116 UBA/ThiF-type NAD/FAD-binding protein.
       0.551
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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