Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psed_4366PFAM: Peptidase M23; KEGG: rop:ROP_10830 peptidase M23 family protein. (256 aa)    
Predicted Functional Partners:
Psed_6492
Peptidoglycan glycosyltransferase; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; PASTA; KEGG: sen:SACE_0314 penicillin binding protein (class A); SMART: PASTA.
 
   
 0.690
Psed_3637
Peptidoglycan glycosyltransferase; KEGG: sen:SACE_0314 penicillin binding protein (class A); PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase.
 
   
 0.680
Psed_2439
Peptidoglycan glycosyltransferase; KEGG: amd:AMED_3027 penicillin-binding protein; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase.
 
   
 0.633
Psed_6661
Peptidoglycan glycosyltransferase; KEGG: nfa:nfa55570 putative penicillin-binding protein; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase.
 
   
 0.617
Psed_3618
PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; KEGG: mva:Mvan_6036 glycosyl transferase family protein.
 
   
 0.609
Psed_4367
Hypothetical protein.
       0.547
Psed_1187
Protein of unknown function DUF214; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
  
 0.521
mltG
Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
 
  
 0.515
Psed_6385
PFAM: Peptidase M23; KEGG: xau:Xaut_4198 peptidase M23B.
  
     0.501
Psed_4365
Hypothetical protein.
       0.493
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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