Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Psed_4367Hypothetical protein. (119 aa)    
Predicted Functional Partners:
Psed_4366
PFAM: Peptidase M23; KEGG: rop:ROP_10830 peptidase M23 family protein.
       0.547
Psed_4368
Hypothetical protein.
       0.487
Psed_4369
PFAM: Cytochrome c oxidase caa3-type, assembly factor CtaG-related; KEGG: cai:Caci_1675 hypothetical protein.
       0.487
Psed_4370
PFAM: Copper resistance protein CopC, core; KEGG: sro:Sros_6847 conserved hypothetical protein of Cu resistance protein CopC-like protein.
       0.487
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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