STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4390KEGG: sen:SACE_0474 hypothetical protein. (371 aa)    
Predicted Functional Partners:
Psed_1219
KEGG: fra:Francci3_2715 hypothetical protein.
  
     0.650
Psed_4389
TIGRFAM: Excisionase/Xis, DNA-binding; KEGG: kfl:Kfla_2180 DNA binding domain protein, excisionase family.
 
  
 0.642
Psed_5223
KEGG: aau:AAur_pTC10047 putative sporulation-associated protein.
 
  
 0.615
Psed_4811
PFAM: DNA methylase, adenine-specific; KEGG: sen:SACE_6614 putative type I restriction system adenine methylase.
 
  
 0.605
Psed_1218
KEGG: fre:Franean1_2549 hypothetical protein.
 
     0.597
Psed_1215
KEGG: fre:Franean1_2547 hypothetical protein.
  
  
 0.587
Psed_5615
PFAM: RDD; KEGG: sro:Sros_9150 membrane protein/domain-like protein.
 
   
 0.575
Psed_1220
PFAM: NLP/P60; Lytic transglycosylase-like, catalytic; KEGG: amd:AMED_7298 NLP/P60 protein.
  
     0.535
Psed_1212
KEGG: fre:Franean1_2740 hypothetical protein.
 
   
 0.498
Psed_4388
Hypothetical protein.
       0.478
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.