STRINGSTRING
Psed_4516 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4516" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4516Hypothetical protein (650 aa)    
Predicted Functional Partners:
Psed_1567
GtrA family protein (165 aa)
   
          0.579
Psed_5034
Glycosyl transferase protein (707 aa)
   
          0.552
Psed_0211
GCN5-like N-acetyltransferase (215 aa)
 
          0.486
Psed_4224
Polyketide cyclase/dehydrase (168 aa)
   
          0.477
Psed_4834
Penicillinase repressor (135 aa)
   
          0.471
Psed_5838
Nitrilotriacetate monooxygenase FMN-dependent oxidoreductase (454 aa)
 
          0.449
Psed_4933
Hypothetical protein (270 aa)
 
          0.442
Psed_2212
Hypothetical protein (130 aa)
   
          0.442
Psed_4437
Salicylate 1-monooxygenase (377 aa)
            0.441
Psed_5033
Family 2 glycosyl transferase (420 aa)
 
          0.428
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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