STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4567PFAM: Domain of unknown function DUF1731, C-terminal; NAD-dependent epimerase/dehydratase; KEGG: rop:ROP_08790 hypothetical protein. (294 aa)    
Predicted Functional Partners:
lipB
Octanoyltransferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
     
 0.808
Psed_4566
KEGG: sen:SACE_1638 dihydrolipoamide succinyltransferase; TIGRFAM: 2-oxoglutarate dehydrogenase, E2 component; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding.
  
  
 0.733
arcA
HAMAP: Arginine deiminase; KEGG: scb:SCAB_23151 arginine deiminase; PFAM: Amidinotransferase.
   
    0.586
Psed_5001
PFAM: Peroxiredoxin, OsmC-like protein; GCN5-related N-acetyltransferase (GNAT) domain; KEGG: sml:Smlt2722 putative OsmC-like protein.
  
  
 0.574
Psed_3629
KEGG: nda:Ndas_2917 GCN5-related N-acetyltransferase.
  
    0.558
Psed_4565
TIGRFAM: Dihydrolipoamide dehydrogenase; KEGG: svi:Svir_10500 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation.
  
    0.556
Psed_4564
KEGG: mva:Mvan_3578 hypothetical protein.
     
 0.540
Psed_3545
KEGG: sen:SACE_2050 secreted protein.
   
  
 0.539
Psed_1960
CsbD family protein; PFAM: CsbD-like; KEGG: nml:Namu_0307 CsbD family protein; Belongs to the UPF0337 (CsbD) family.
   
    0.535
Psed_0135
PFAM: NAD-dependent epimerase/dehydratase; KEGG: tfu:Tfu_2676 hypothetical protein.
   
    0.525
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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