Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4584KEGG: sro:Sros_6431 hypothetical protein. (235 aa)    
Predicted Functional Partners:
Psed_4583
KEGG: sro:Sros_4541 hypothetical protein.
       0.731
Psed_4582
PFAM: Acriflavin resistance protein; KEGG: sro:Sros_4438 hypothetical protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
     0.636
Psed_3129
PFAM: Protein of unknown function DUF457, transmembrane; KEGG: sen:SACE_6637 membrane-bound metal-dependent hydrolase.
  
     0.576
Psed_5725
Roadblock/LC7 family protein; KEGG: svi:Svir_24600 hypothetical protein; PFAM: Dynein light chain-related; SMART: Dynein light chain-related.
  
     0.522
Psed_3138
PFAM: Protein of unknown function DUF742; KEGG: sen:SACE_0559 hypothetical protein.
  
     0.521
Psed_5724
KEGG: amd:AMED_2491 histidine kinase-like ATPase containing nitrate/nitrite sensor domain; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; HAMP linker domain.
  
     0.519
Psed_3660
Helix-turn-helix domain protein; SMART: Helix-turn-helix type 3; KEGG: sro:Sros_7488 hypothetical protein.
  
     0.503
Psed_5726
PFAM: Protein of unknown function DUF742; KEGG: sen:SACE_0559 hypothetical protein.
  
     0.458
Psed_4053
Hypothetical protein; KEGG: tbi:Tbis_0974 histidine kinase.
  
     0.448
Psed_3659
PFAM: Protein of unknown function DUF574; KEGG: sen:SACE_4240 hypothetical protein.
  
     0.444
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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