STRINGSTRING
Psed_4591 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4591" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4591Hypothetical protein (268 aa)    
Predicted Functional Partners:
Psed_4590
Succinate dehydrogenase (ubiquinone) (648 aa)
 
          0.979
Psed_4589
Succinate dehydrogenase and fumarate reductase iron-sulfur protein (256 aa)
 
          0.979
Psed_4593
Succinate dehydrogenase or fumarate reductase, flavoprotein subunit (647 aa)
              0.673
Psed_4592
Succinate dehydrogenase and fumarate reductase iron-sulfur protein (251 aa)
              0.661
Psed_2460
Hypothetical protein (215 aa)
   
          0.653
Psed_3980
Alanine rich lipoprotein LppW (323 aa)
   
          0.554
Psed_1528
Anti-sigma factor (150 aa)
   
          0.521
Psed_3602
Small GTP-binding protein (717 aa)
   
          0.518
Psed_2794
Hypothetical protein (129 aa)
   
          0.508
Psed_5533
Hypothetical protein (69 aa)
   
          0.490
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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