STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4591KEGG: msp:Mspyr1_03630 hypothetical protein. (268 aa)    
Predicted Functional Partners:
Psed_4589
KEGG: amd:AMED_2353 succinate dehydrogenase iron-sulfur protein; TIGRFAM: Succinate dehydrogenase/fumarate reductase iron-sulphur protein; PFAM: Ferredoxin.
 
 
 
 0.985
Psed_4590
Succinate dehydrogenase (ubiquinone); KEGG: kfl:Kfla_5537 L-aspartate oxidase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal.
 
 
 
 0.976
Psed_4592
KEGG: tcu:Tcur_1121 succinate dehydrogenase and fumarate reductase iron-sulfur protein; TIGRFAM: Succinate dehydrogenase/fumarate reductase iron-sulphur protein; PFAM: 4Fe-4S binding domain; Ferredoxin.
   
 
 0.820
Psed_4593
TIGRFAM: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit, low-GC Gram-positive bacteria; KEGG: mil:ML5_2258 succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal.
   
 
 0.753
Psed_1528
KEGG: sen:SACE_4196 anti-sigma factor.
  
     0.531
Psed_4594
TIGRFAM: Succinate dehydrogenase, cytochrome b558 subunit; KEGG: saq:Sare_1707 succinate dehydrogenase/fumarate reductase cytochrome b subunit.
       0.438
Psed_0111
KEGG: saq:Sare_4994 hypothetical protein.
  
     0.406
Psed_0394
KEGG: sen:SACE_0376 hypothetical protein.
  
     0.402
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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