STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4632KEGG: rha:RHA1_ro08094 hypothetical protein. (141 aa)    
Predicted Functional Partners:
Psed_4631
Putative transcriptional regulator; PFAM: LexA, DNA-binding domain; KEGG: nca:Noca_4860 transcriptional regulator.
 
     0.883
Psed_4633
PFAM: Cupin 2, conserved barrel; KEGG: nml:Namu_3635 MarR family transcriptional regulator.
 
     0.879
Psed_4629
PFAM: Protein of unknown function DUF2249; Cupin 2, conserved barrel; KEGG: nca:Noca_4862 hypothetical protein.
 
     0.875
Psed_4630
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
       0.793
Psed_1981
PFAM: Cupin 2, conserved barrel; KEGG: mil:ML5_2039 cupin 2 conserved barrel domain protein.
 
     0.505
Psed_4634
KEGG: gob:Gobs_2979 transposase IS4 family protein; manually curated; PFAM: Transposase, IS4-like.
       0.460
Psed_5081
PFAM: Uncharacterised protein family YphA; KEGG: rha:RHA1_ro04235 hypothetical protein.
  
     0.423
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.