Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4656KEGG: ami:Amir_5813 hypothetical protein. (350 aa)    
Predicted Functional Partners:
Psed_4655
PFAM: Protein of unknown function DUF1778; KEGG: sen:SACE_5903 hypothetical protein.
 
     0.964
Psed_4962
KEGG: cwo:Cwoe_1186 hypothetical protein.
 
     0.748
Psed_6508
KEGG: ami:Amir_0254 hypothetical protein.
  
     0.716
Psed_0165
KEGG: ami:Amir_0089 hypothetical protein.
  
     0.699
Psed_0149
KEGG: amd:AMED_0129 hypothetical protein.
  
     0.692
Psed_2133
KEGG: sen:SACE_1522 hypothetical protein.
  
     0.691
Psed_6564
KEGG: amd:AMED_1184 hypothetical protein.
  
     0.672
Psed_5650
KEGG: ami:Amir_0482 hypothetical protein.
  
     0.671
Psed_5387
KEGG: ami:Amir_6569 heat shock protein 70.
  
    0.670
Psed_5297
KEGG: ami:Amir_6447 hypothetical protein.
 
     0.663
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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