STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4772DAK2 domain fusion protein YloV; KEGG: ami:Amir_5978 Dak phosphatase; TIGRFAM: DAK2 domain-containing protein YloV; PFAM: Dak phosphatase. (552 aa)    
Predicted Functional Partners:
Psed_2008
KEGG: ami:Amir_1201 DegV family protein; TIGRFAM: DegV; PFAM: DegV.
 
 0.980
Psed_4771
TIGRFAM: DNA helicase, ATP-dependent, RecG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; Helicase, C-terminal; KEGG: sen:SACE_6119 ATP-dependent DNA helicase RecG; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal.
  
    0.903
rpmB
TIGRFAM: Ribosomal protein L28; HAMAP: Ribosomal protein L28; KEGG: nfa:nfa41960 50S ribosomal protein L28; PFAM: Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
     
 0.676
Psed_2910
Protein of unknown function DUF322; PFAM: Alkaline shock protein Asp23; KEGG: sen:SACE_1868 stress-like protein.
 
  
 0.536
Psed_3818
KEGG: ami:Amir_5439 DNA repair protein RecN; TIGRFAM: DNA recombination/repair protein RecN; PFAM: RecF/RecN/SMC.
   
    0.479
Psed_1957
KEGG: sro:Sros_8027 hypothetical protein.
  
  
 0.472
Psed_2906
KEGG: sen:SACE_1864 hypothetical protein.
  
  
 0.472
Psed_4273
Hypothetical protein.
  
  
 0.472
Psed_0173
KEGG: msm:MSMEG_6407 Cof-like hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: HAD superfamily hydrolase-like, type 3.
  
    0.434
Psed_1961
KEGG: sen:SACE_1867 hypothetical protein.
  
  
 0.432
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.