STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4792PFAM: Transcription regulator AsnC-type, C-terminal; KEGG: nml:Namu_1487 AsnC family transcriptional regulator. (78 aa)    
Predicted Functional Partners:
Psed_4793
KEGG: nfa:nfa42020 hypothetical protein.
       0.860
thiL
Thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.
       0.669
Psed_5644
PFAM: Protein of unknown function DUF2596; KEGG: svi:Svir_02660 protein of unknown function (DUF2596).
  
     0.608
Psed_6498
KEGG: svi:Svir_36220 oxyanion-translocating ATPase.
  
     0.574
Psed_2793
PFAM: Methyltransferase type 12; KEGG: ami:Amir_5788 methyltransferase type 12.
  
     0.559
Psed_6497
KEGG: svi:Svir_36230 oxyanion-translocating ATPase.
  
     0.555
Psed_2038
PFAM: Streptomyces sporulation/cell division protein SsgA; KEGG: ami:Amir_2015 sporulation and cell division protein SsgA.
  
     0.529
Psed_2769
Cyclase/dehydrase; PFAM: Streptomyces cyclase/dehydrase; KEGG: amd:AMED_2448 cyclase/dehydrase.
  
     0.501
Psed_3529
Helix-turn-helix domain protein; KEGG: ami:Amir_5247 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.
  
  
 0.493
Psed_2715
PFAM: Streptomyces sporulation/cell division protein SsgA; KEGG: amd:AMED_0264 sporulation and cell division protein SsgA.
  
     0.470
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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