STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4856KEGG: msp:Mspyr1_54050 transcriptional regulator. (105 aa)    
Predicted Functional Partners:
Psed_4855
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: msp:Mspyr1_54040 site-specific recombinase XerD.
 
   
 0.947
Psed_3948
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: msp:Mspyr1_54040 site-specific recombinase XerD.
 
   
 0.778
Psed_6045
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: msp:Mspyr1_54040 site-specific recombinase XerD.
 
   
 0.778
Psed_4857
KEGG: rer:pREL1_0202 hypothetical protein; manually curated; PFAM: Integrase, N-terminal SAM-like, phage.
     
 0.614
Psed_1601
Hypothetical protein; KEGG: mva:Mvan_3374 aminoglycoside phosphotransferase.
 
    0.587
Psed_1446
KEGG: amd:AMED_7526 integral membrane protein.
  
    0.571
Psed_0867
Integrase catalytic region; KEGG: rer:pREL1_0265 transposase; manually curated; PFAM: Integrase, catalytic core.
  
     0.492
Psed_0028
PFAM: Integrase, catalytic core; KEGG: rer:pREL1_0265 transposase.
  
     0.488
Psed_1146
PFAM: Integrase, catalytic core; KEGG: rer:pREL1_0265 transposase.
  
     0.488
Psed_3944
PFAM: Integrase, catalytic core; KEGG: rer:pREL1_0265 transposase.
  
     0.488
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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