Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Psed_4906KEGG: rop:ROP_70910 hypothetical protein; Belongs to the CoA-transferase III family. (387 aa)    
Predicted Functional Partners:
Psed_4907
PFAM: Amidohydrolase 3; KEGG: rop:ROP_70920 hypothetical protein.
 
     0.949
Psed_4905
PFAM: Crotonase, core; KEGG: amd:AMED_7205 enoyl-CoA hydratase/isomerase.
 
 
 0.909
Psed_4909
KEGG: rop:ROP_71030 hypothetical protein.
 
     0.772
Psed_1811
KEGG: req:REQ_15570 hypothetical protein.
 
     0.770
Psed_0274
KEGG: fri:FraEuI1c_2884 aromatic-ring-hydroxylating dioxygenase beta subunit.
  
     0.564
Psed_3561
PFAM: Aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: fri:FraEuI1c_2884 aromatic-ring-hydroxylating dioxygenase beta subunit.
  
     0.542
Psed_6208
Formyl-CoA transferase; KEGG: sro:Sros_6624 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.
  
     0.517
Psed_4214
Formyl-CoA transferase; KEGG: rop:ROP_28170 CaiB/BaiF family protein; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.
  
     0.501
Psed_4908
KEGG: fal:FRAAL1950 putative O-succinylbenzoate--CoA ligase (OSB-CoA synthetase) (O-succinylbenzoyl-CoA synthetase); PFAM: AMP-dependent synthetase/ligase.
 
   
 0.501
Psed_4111
Formyl-CoA transferase; KEGG: fal:FRAAL3412 putative alpha-methylacyl-CoA racemase; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.
  
     0.494
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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