STRINGSTRING
Psed_4906 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4906" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4906Hypothetical protein (387 aa)    
Predicted Functional Partners:
Psed_4907
Amidohydrolase (443 aa)
 
          0.971
Psed_4905
enoyl-CoA hydratase (344 aa)
 
   
  0.946
Psed_4908
o-succinylbenzoate--CoA ligase (496 aa)
 
   
  0.762
Psed_0649
3-hydroxybutyryl-CoA epimerase (720 aa)
   
   
  0.699
Psed_6531
formyl-CoA transferase (393 aa)
 
          0.691
Psed_6208
formyl-CoA transferase (406 aa)
   
          0.652
Psed_2951
formyl-CoA transferase (393 aa)
 
          0.633
Psed_4153
formyl-CoA transferase (414 aa)
 
          0.614
Psed_1949
L-carnitine dehydratase/bile acid-inducible protein F (399 aa)
   
          0.607
Psed_0262
formyl-CoA transferase (404 aa)
 
          0.584
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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