Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
Psed_4909KEGG: rop:ROP_71030 hypothetical protein. (104 aa)    
Predicted Functional Partners:
Psed_4908
KEGG: fal:FRAAL1950 putative O-succinylbenzoate--CoA ligase (OSB-CoA synthetase) (O-succinylbenzoyl-CoA synthetase); PFAM: AMP-dependent synthetase/ligase.
 
     0.866
Psed_4907
PFAM: Amidohydrolase 3; KEGG: rop:ROP_70920 hypothetical protein.
 
     0.779
Psed_4906
KEGG: rop:ROP_70910 hypothetical protein; Belongs to the CoA-transferase III family.
 
     0.772
Psed_4905
PFAM: Crotonase, core; KEGG: amd:AMED_7205 enoyl-CoA hydratase/isomerase.
 
     0.755
Psed_0274
KEGG: fri:FraEuI1c_2884 aromatic-ring-hydroxylating dioxygenase beta subunit.
  
     0.719
Psed_3561
PFAM: Aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: fri:FraEuI1c_2884 aromatic-ring-hydroxylating dioxygenase beta subunit.
  
     0.695
Psed_3222
PFAM: Amidohydrolase 2; KEGG: fri:FraEuI1c_1886 amidohydrolase 2.
 
     0.610
Psed_2592
KEGG: fal:FRAAL3396 hypothetical protein.
  
     0.563
Psed_5927
KEGG: fri:FraEuI1c_4435 aminoglycoside phosphotransferase; PFAM: Aminoglycoside phosphotransferase; SMART: CHK kinase-like.
  
     0.505
Psed_2593
PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: art:Arth_2287 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein.
  
     0.478
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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