STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4928FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; TIGRFAM: Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A; KEGG: rha:RHA1_ro02225 nitrilotriacetate monoxygenase, component A. (457 aa)    
Predicted Functional Partners:
Psed_2200
KEGG: fal:FRAAL3868 putative alkanesulfonate monooxygenase.
  
    0.742
Psed_4517
KEGG: sma:SAV_6696 monooxygenase; PFAM: Luciferase-like, subgroup.
  
    0.729
Psed_4926
KEGG: rop:ROP_19400 putative oxygenase.
 
    
0.694
Psed_4931
ABC-type transporter, periplasmic subunit family 3; KEGG: sma:SAV_7210 ABC transporter substrate-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3.
 
    0.620
Psed_4929
KEGG: sma:SAV_7208 ABC transporter permease protein; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component.
 
    0.562
Psed_4930
Sulfate-transporting ATPase; PFAM: ABC transporter-like; KEGG: sma:SAV_7209 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core.
  
    0.486
Psed_4932
FR47 domain protein; PFAM: FR47-like; KEGG: fri:FraEuI1c_3113 FR47 domain protein.
 
     0.473
Psed_5839
PFAM: NADPH-dependent FMN reductase; KEGG: fri:FraEuI1c_0040 NADPH-dependent FMN reductase.
 
 
 0.414
Psed_2371
ABC-type transporter, periplasmic subunit; PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: fri:FraEuI1c_3106 extracellular solute-binding protein family 5.
 
   
 0.400
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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