Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5000PFAM: Uracil-DNA glycosylase-like; KEGG: rmu:RMDY18_06580 uracil-DNA glycosylase. (209 aa)    
Predicted Functional Partners:
msrA
Peptide methionine sulfoxide reductase msrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
       0.748
Psed_4998
KEGG: amd:AMED_7516 hypothetical protein.
       0.702
Psed_5001
PFAM: Peroxiredoxin, OsmC-like protein; GCN5-related N-acetyltransferase (GNAT) domain; KEGG: sml:Smlt2722 putative OsmC-like protein.
 
     0.669
Psed_4997
PFAM: Oxidoreductase, FAD-binding domain; Oxidoreductase FAD/NAD(P)-binding; KEGG: sco:SCO7059 oxidoreductase.
       0.642
Psed_4996
PFAM: Oxidoreductase, molybdopterin-binding domain; KEGG: nml:Namu_0604 oxidoreductase molybdopterin binding.
       0.631
Psed_5365
Universal protein YeaZ; KEGG: ami:Amir_6548 peptidase M22 glycoprotease; TIGRFAM: Conserved hypothetical protein CHP03725, YeaZ; PFAM: Peptidase M22, glycoprotease.
  
    0.474
gpmA
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
  
    0.446
Psed_1547
Pyruvate carboxylase; KEGG: rop:ROP_29690 putative carboxyltransferase; PFAM: Carboxylase, conserved domain; Pyruvate carboxyltransferase.
  
    0.422
Psed_3034
KEGG: sti:Sthe_2821 pyruvate carboxylase; PFAM: Carboxylase, conserved domain; Pyruvate carboxyltransferase.
  
    0.422
Psed_4808
KEGG: req:REQ_30370 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding.
   
 
 0.408
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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