Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psed_5035Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: fre:Franean1_6683 TetR family transcriptional regulator. (192 aa)    
Predicted Functional Partners:
Psed_5036
PFAM: Polyketide cyclase/dehydrase; KEGG: amd:AMED_6353 hypothetical protein.
 
     0.657
Psed_5578
ATP-dependent transcriptional regulator, MalT-like, LuxR family; KEGG: msm:MSMEG_3290 regulatory protein; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal.
  
   
 0.511
Psed_4319
Transcriptional regulator, LuxR family; KEGG: sro:Sros_8709 ATPase-like protein; PFAM: Transcription regulator LuxR, C-terminal; Tetratricopeptide TPR-4; SMART: Transcription regulator LuxR, C-terminal.
  
   
 0.495
Psed_5037
o-succinylbenzoate--CoA ligase; KEGG: sen:SACE_1293 acyl-CoA synthase; PFAM: AMP-dependent synthetase/ligase.
       0.492
Psed_3091
PFAM: Bacterial transcriptional activator domain; KEGG: ach:Achl_4571 transcriptional activator domain protein.
  
   
 0.408
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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