STRINGSTRING
Psed_5035 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5035" - TetR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5035TetR family transcriptional regulator (192 aa)    
Predicted Functional Partners:
Psed_5036
Polyketide cyclase/dehydrase (148 aa)
              0.657
Psed_5037
o-succinylbenzoate--CoA ligase (553 aa)
              0.577
Psed_4215
Pyridoxamine 5’-phosphate oxidase-related FMN-binding protein (185 aa)
   
          0.558
Psed_5710
Hypothetical protein (231 aa)
   
          0.555
Psed_3438
Cupin (154 aa)
   
          0.519
Psed_3957
Hypothetical protein (201 aa)
   
          0.510
Psed_3344
G-D-S-L family lipolytic protein (305 aa)
   
          0.504
Psed_5928
Hypothetical protein (164 aa)
   
          0.491
Psed_3437
Hypothetical protein (65 aa)
   
          0.476
Psed_5299
Polyketide cyclase/dehydrase (161 aa)
   
          0.471
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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