STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5059PFAM: Alpha/beta hydrolase fold-1; KEGG: rhi:NGR_b01850 hypothetical protein. (266 aa)    
Predicted Functional Partners:
Psed_5061
PFAM: Alpha/beta hydrolase fold-1; KEGG: mkm:Mkms_3844 alpha/beta hydrolase fold.
 
     0.882
Psed_6034
PFAM: Alpha/beta hydrolase fold-1; KEGG: nca:Noca_0210 alpha/beta hydrolase fold.
  
     0.750
Psed_6465
PFAM: Alpha/beta hydrolase fold-1; KEGG: rso:RSc0298 B-ketoadipate enol-lactone hydrolase protein.
  
     0.746
Psed_5136
PFAM: Alpha/beta hydrolase fold-1; KEGG: rha:RHA1_ro03350 hydrolase.
  
     0.740
Psed_5060
PFAM: Luciferase-like, subgroup; KEGG: rhi:NGR_b01860 probable monooxygenase protein.
 
    0.731
Psed_0622
PFAM: Alpha/beta hydrolase fold-1; KEGG: pol:Bpro_1857 3-oxoadipate enol-lactonase.
  
     0.729
Psed_0344
PFAM: Alpha/beta hydrolase fold-1; KEGG: rha:RHA1_ro04298 hydrolase.
  
     0.727
Psed_0292
PFAM: Alpha/beta hydrolase fold-1; KEGG: rha:RHA1_ro08833 epoxide hydrolase.
  
     0.726
Psed_2169
PFAM: Alpha/beta hydrolase fold-1; KEGG: scb:SCAB_77421 hydrolase.
  
     0.724
Psed_3753
PFAM: Alpha/beta hydrolase fold-1; KEGG: met:M446_4655 3-oxoadipate enol-lactonase.
  
     0.711
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.