Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psed_5083PFAM: Polysaccharide deacetylase; KEGG: amd:AMED_3586 polysaccharide deacetylase. (261 aa)    
Predicted Functional Partners:
Psed_5082
KEGG: amd:AMED_3585 YVTN beta-propeller repeat-containing protein.
     
 0.815
Psed_4864
PFAM: Polysaccharide deacetylase; KEGG: fri:FraEuI1c_3800 polysaccharide deacetylase.
  
     0.773
Psed_5085
Esterase; PFAM: Putative esterase; KEGG: amd:AMED_0317 esterase/lipase-like protein.
 
   
 0.495
Psed_4228
PFAM: Protein of unknown function DUF421; KEGG: rop:ROP_04580 hypothetical membrane protein.
 
     0.454
Psed_5084
PFAM: Major facilitator superfamily MFS-1; KEGG: fri:FraEuI1c_1649 major facilitator superfamily MFS_1.
       0.415
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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