Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Psed_5122 | Psed_5123 | Bilirubin oxidase; KEGG: sen:SACE_1822 spore coat protein (outer); PFAM: Multicopper oxidase, type 2; Multicopper oxidase, type 3; Multicopper oxidase, type 1. | KEGG: kfl:Kfla_5958 hypothetical protein. | 0.931 |
Psed_5122 | Psed_5124 | Bilirubin oxidase; KEGG: sen:SACE_1822 spore coat protein (outer); PFAM: Multicopper oxidase, type 2; Multicopper oxidase, type 3; Multicopper oxidase, type 1. | Transcriptional regulator, PadR-like family; PFAM: Transcription regulator PadR N-terminal-like; KEGG: kfl:Kfla_7067 transcriptional regulator, PadR-like family. | 0.562 |
Psed_5122 | Psed_5125 | Bilirubin oxidase; KEGG: sen:SACE_1822 spore coat protein (outer); PFAM: Multicopper oxidase, type 2; Multicopper oxidase, type 3; Multicopper oxidase, type 1. | KEGG: mil:ML5_1039 hypothetical protein. | 0.715 |
Psed_5123 | Psed_5122 | KEGG: kfl:Kfla_5958 hypothetical protein. | Bilirubin oxidase; KEGG: sen:SACE_1822 spore coat protein (outer); PFAM: Multicopper oxidase, type 2; Multicopper oxidase, type 3; Multicopper oxidase, type 1. | 0.931 |
Psed_5123 | Psed_5124 | KEGG: kfl:Kfla_5958 hypothetical protein. | Transcriptional regulator, PadR-like family; PFAM: Transcription regulator PadR N-terminal-like; KEGG: kfl:Kfla_7067 transcriptional regulator, PadR-like family. | 0.691 |
Psed_5123 | Psed_5125 | KEGG: kfl:Kfla_5958 hypothetical protein. | KEGG: mil:ML5_1039 hypothetical protein. | 0.888 |
Psed_5124 | Psed_5122 | Transcriptional regulator, PadR-like family; PFAM: Transcription regulator PadR N-terminal-like; KEGG: kfl:Kfla_7067 transcriptional regulator, PadR-like family. | Bilirubin oxidase; KEGG: sen:SACE_1822 spore coat protein (outer); PFAM: Multicopper oxidase, type 2; Multicopper oxidase, type 3; Multicopper oxidase, type 1. | 0.562 |
Psed_5124 | Psed_5123 | Transcriptional regulator, PadR-like family; PFAM: Transcription regulator PadR N-terminal-like; KEGG: kfl:Kfla_7067 transcriptional regulator, PadR-like family. | KEGG: kfl:Kfla_5958 hypothetical protein. | 0.691 |
Psed_5124 | Psed_5125 | Transcriptional regulator, PadR-like family; PFAM: Transcription regulator PadR N-terminal-like; KEGG: kfl:Kfla_7067 transcriptional regulator, PadR-like family. | KEGG: mil:ML5_1039 hypothetical protein. | 0.921 |
Psed_5125 | Psed_5122 | KEGG: mil:ML5_1039 hypothetical protein. | Bilirubin oxidase; KEGG: sen:SACE_1822 spore coat protein (outer); PFAM: Multicopper oxidase, type 2; Multicopper oxidase, type 3; Multicopper oxidase, type 1. | 0.715 |
Psed_5125 | Psed_5123 | KEGG: mil:ML5_1039 hypothetical protein. | KEGG: kfl:Kfla_5958 hypothetical protein. | 0.888 |
Psed_5125 | Psed_5124 | KEGG: mil:ML5_1039 hypothetical protein. | Transcriptional regulator, PadR-like family; PFAM: Transcription regulator PadR N-terminal-like; KEGG: kfl:Kfla_7067 transcriptional regulator, PadR-like family. | 0.921 |