STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5128PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: scb:SCAB_8441 oxidoreductase. (307 aa)    
Predicted Functional Partners:
Psed_5127
Transcriptional regulator, Fis family; PFAM: Helix-turn-helix, Fis-type; GAF; KEGG: msm:MSMEG_1970 sigma factor.
     
 0.530
Psed_1661
KEGG: svi:Svir_29990 hypothetical protein.
   
 0.506
Psed_0766
Phenol 2-monooxygenase; KEGG: tcu:Tcur_0530 oxidoreductase FAD/NAD(P)-binding domain-containing protein; PFAM: Oxidoreductase, FAD-binding domain; Ferredoxin; Oxidoreductase FAD/NAD(P)-binding.
 
 0.479
Psed_2137
(Acyl-carrier-protein) S-malonyltransferase; PFAM: Acyl transferase; KEGG: rha:RHA1_ro01199 [acyl-carrier protein] S-malonyltransferase; SMART: Polyketide synthase, acyl transferase domain.
  
 
 0.476
Psed_5126
PFAM: Luciferase-like, subgroup; KEGG: rha:RHA1_ro11046 limonene 1,2-monooxygenase (NADH-dependent).
       0.456
Psed_0727
PFAM: Sulfatase; KEGG: rop:ROP_36660 putative arylsulfatase.
   
 
 0.425
Psed_1081
KEGG: sro:Sros_3700 hypothetical protein.
   
 
 0.425
Psed_6551
Nitric oxide dioxygenase; KEGG: ami:Amir_6945 oxidoreductase FAD-binding domain protein; PFAM: Oxidoreductase FAD/NAD(P)-binding; Globin, subset; Oxidoreductase, FAD-binding domain; Belongs to the globin family.
 
 
 0.422
sbcD
Nuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
   
 
 0.414
Psed_0073
KEGG: rha:RHA1_ro10196 ferredoxin--NAD(+) reductase; PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase, FAD-binding domain; Ferredoxin.
  
 0.402
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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