STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5129Transcriptional regulator, PadR-like family; PFAM: Transcription regulator PadR N-terminal-like; KEGG: mta:Moth_2210 PadR family transcriptional regulator. (140 aa)    
Predicted Functional Partners:
Psed_5130
PFAM: ABC-type glycine betaine transport system, substrate-binding domain; KEGG: rop:ROP_60640 putative ABC transporter substrate-binding protein.
     
 0.499
Psed_5133
SMART: ATPase, AAA+ type, core; TIGRFAM: Glycine betaine/L-proline transport ATP-binding subunit; KEGG: ami:Amir_6271 ABC transporter related; PFAM: ABC transporter-like.
       0.433
Psed_5131
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: aau:AAur_2815 ABC-type proline/glycine betaine transport systems, permease component.
     
 0.426
Psed_5132
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: amd:AMED_7958 permease component of ABC-type proline/glycine betaine transport system.
     
 0.426
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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