Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5151KEGG: ami:Amir_6287 hypothetical protein. (146 aa)    
Predicted Functional Partners:
Psed_0141
KEGG: rer:RER_01330 hypothetical protein.
  
     0.746
Psed_6514
KEGG: svi:Svir_38200 hypothetical protein.
 
     0.743
Psed_0966
KEGG: ami:Amir_0730 hypothetical protein.
  
     0.742
Psed_6674
KEGG: ami:Amir_7081 hypothetical protein.
  
    0.741
Psed_1525
KEGG: ami:Amir_1029 hypothetical protein.
  
     0.735
Psed_1068
KEGG: sen:SACE_1059 hypothetical protein.
  
     0.732
Psed_3867
PFAM: Domain of unknown function DUF402; KEGG: svi:Svir_25910 hypothetical protein.
  
     0.731
Psed_5372
KEGG: ami:Amir_6559 dienelactone hydrolase-like protein.
  
     0.721
Psed_4803
KEGG: ami:Amir_1133 hypothetical protein.
  
     0.710
Psed_5295
KEGG: svi:Svir_05470 hypothetical protein.
  
     0.708
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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