STRINGSTRING
Psed_5166 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5166" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5166Hypothetical protein (125 aa)    
Predicted Functional Partners:
Psed_5165
TetR family transcriptional regulator (190 aa)
 
          0.910
Psed_6573
Monooxygenase FAD-binding protein (359 aa)
   
          0.558
Psed_2299
Hypothetical protein (133 aa)
   
          0.550
Psed_1340
TetR family transcriptional regulator (190 aa)
   
          0.544
Psed_6150
ATP-binding protein (309 aa)
   
          0.540
Psed_5579
MOSC domain-containing protein beta barrel domain-containing protein (282 aa)
   
          0.514
Psed_3301
Glyoxalase/bleomycin resistance protein/dioxygenase (123 aa)
   
          0.494
Psed_5394
Hypothetical protein (138 aa)
   
          0.486
Psed_0256
MOSC domain-containing protein (273 aa)
   
          0.485
Psed_1971
F420-dependent protein (166 aa)
   
          0.476
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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