Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Psed_5166KEGG: mkm:Mkms_2678 hypothetical protein. (125 aa)    
Predicted Functional Partners:
Psed_5165
Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sro:Sros_0302 putative transcriptional regulator, TetR family.
 
  
 0.858
Psed_0578
PFAM: Cupin 2, conserved barrel; KEGG: sro:Sros_8205 hypothetical protein.
 
 
 0.553
Psed_3965
KEGG: sco:SCO1748 expression regulator.
  
     0.498
Psed_4354
Rhodanese-like protein; KEGG: rha:RHA1_ro11220 ArsR family transcriptional regulator; PFAM: Rhodanese-like; HTH transcriptional regulator, ArsR; SMART: Rhodanese-like; HTH transcriptional regulator, ArsR.
 
  
 0.490
Psed_2390
PFAM: Gas vesicle protein GvpO; KEGG: sen:SACE_0971 hypothetical protein.
  
     0.487
Psed_3438
PFAM: Cupin 2, conserved barrel; KEGG: gob:Gobs_3405 cupin 2 conserved barrel domain-containing protein.
 
     0.474
Psed_1340
Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: fal:FRAAL0421 putative regulatory protein.
 
  
 0.470
Psed_6323
KEGG: rha:RHA1_ro05161 hypothetical protein.
  
     0.465
Psed_6634
PFAM: Protein of unknown function DUF2339, transmembrane; KEGG: ami:Amir_7071 hypothetical protein.
  
     0.465
Psed_2389
KEGG: req:REQ_25930 gas vesicle protein GvpG.
  
     0.464
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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