STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5369Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (419 aa)    
Predicted Functional Partners:
ddl
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
 
 0.992
Psed_5367
KEGG: req:REQ_35300 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0079, ATPase bacteria; PFAM: Uncharacterised protein family UPF0079, ATPase bacteria.
  
 0.991
murF
UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
   
 0.982
Psed_5195
TIGRFAM: Alanine dehydrogenase/pyridine nucleotide transhydrogenase; KEGG: mkm:Mkms_2150 L-alanine dehydrogenase; PFAM: Alanine dehydrogenase/PNT, N-terminal; Alanine dehydrogenase/PNT, C-terminal; Belongs to the AlaDH/PNT family.
  
 
 0.963
ddl-2
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
 
 0.951
Psed_5368
PFAM: Alpha/beta hydrolase fold-1; KEGG: ami:Amir_6555 alpha/beta hydrolase fold protein.
     
 0.873
Psed_5364
KEGG: mav:MAV_4368 ribosomal-protein-alanine acetyltransferase; TIGRFAM: Ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain.
     
 0.828
Psed_1785
KEGG: hoh:Hoch_1789 serine--pyruvate transaminase; PFAM: Aminotransferase, class V/Cysteine desulfurase.
    
 0.821
Psed_2545
Nitrilase; KEGG: msm:MSMEG_5373 nitrilase 2; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
  
 
 0.819
Psed_4247
Nitrilase; KEGG: bgf:BC1003_4453 nitrilase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
  
 
 0.819
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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