STRINGSTRING
Psed_5389 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5389" - Secretion protein snm4 in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5389Secretion protein snm4 (488 aa)    
Predicted Functional Partners:
Psed_5388
DNA translocase FtsK (1301 aa)
 
          0.889
Psed_5390
Peptidase S8 and S53 subtilisin kexin sedolisin (391 aa)
              0.863
Psed_0364
Hypothetical protein (390 aa)
   
          0.610
Psed_5387
Hypothetical protein (402 aa)
              0.598
Psed_4261
Hypothetical protein (139 aa)
   
          0.572
Psed_0361
Hypothetical protein (405 aa)
   
          0.538
Psed_2877
Hypothetical protein (186 aa)
   
          0.510
Psed_0092
Hypothetical protein (322 aa)
   
          0.481
Psed_5987
Hypothetical protein (157 aa)
   
          0.476
Psed_0549
Cysteine dioxygenase type I (175 aa)
   
          0.441
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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