STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5389Secretion protein snm4; KEGG: sro:Sros_8100 hypothetical protein; TIGRFAM: Type VII secretion system protein EccD; PFAM: Type VII secretion system protein EccD. (488 aa)    
Predicted Functional Partners:
Psed_5388
PFAM: Cell divisionFtsK/SpoIIIE; KEGG: mau:Micau_5894 cell division protein FtsK/SpoIIIE.
 
 
 0.953
Psed_5391
Protein of unknown function DUF690; PFAM: Type VII secretion system protein EccB; KEGG: gbr:Gbro_3295 hypothetical protein.
 
 
 0.820
Psed_5390
PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; KEGG: tpr:Tpau_0863 peptidase S8 and S53 subtilisin kexin sedolisin; Belongs to the peptidase S8 family.
  
  
 0.813
Psed_5118
PFAM: Cell divisionFtsK/SpoIIIE; KEGG: ami:Amir_0542 cell divisionFtsK/SpoIIIE.
 
 
 0.702
Psed_5778
PFAM: Cell divisionFtsK/SpoIIIE; KEGG: fre:Franean1_1448 cell divisionFtsK/SpoIIIE.
 
 
 0.684
Psed_0856
PFAM: Cell divisionFtsK/SpoIIIE; KEGG: fre:Franean1_1448 cell divisionFtsK/SpoIIIE.
 
 
 0.681
Psed_1127
PFAM: Cell divisionFtsK/SpoIIIE; KEGG: fre:Franean1_1448 cell divisionFtsK/SpoIIIE.
 
 
 0.672
Psed_3868
KEGG: mva:Mvan_0621 hypothetical protein.
  
    0.642
Psed_5387
KEGG: ami:Amir_6569 heat shock protein 70.
 
  
 0.621
Psed_4628
KEGG: sen:SACE_5889 cell division FtsK/SpoIIIE; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase FtsK gamma; SMART: DNA translocase FtsK gamma.
  
 
 0.607
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.