STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5465KEGG: ami:Amir_6643 aspartate aminotransferase; PFAM: Aminotransferase, class I/classII. (407 aa)    
Predicted Functional Partners:
Psed_1955
KEGG: sen:SACE_3998 putative glutamate synthase(NADPH) large subunit; PFAM: Glutamate synthase, central-C; Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, alpha subunit, C-terminal.
  
 
 0.949
Psed_2085
HAMAP: Malate dehydrogenase, NAD-dependent; KEGG: nml:Namu_2341 lactate/malate dehydrogenase; PFAM: Lactate/malate dehydrogenase, N-terminal; Lactate/malate dehydrogenase, C-terminal.
  
 0.941
pheA
KEGG: gob:Gobs_0268 prephenate dehydratase; PFAM: Prephenate dehydratase; Amino acid-binding ACT.
 
 
 0.927
argG
PFAM: Argininosuccinate synthase; TIGRFAM: Argininosuccinate synthase; HAMAP: Argininosuccinate synthase; KEGG: nca:Noca_2474 argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 2 subfamily.
  
 0.926
Psed_1840
KEGG: ami:Amir_5997 cystathionine gamma-lyase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme.
  
 
 0.921
Psed_5167
TIGRFAM: Delta-1-pyrroline-5-carboxylate dehydrogenase 1; KEGG: sen:SACE_1979 delta-1-pyrroline-5-carboxylate dehydrogenase precursor; PFAM: Aldehyde dehydrogenase domain.
   
 0.921
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
 0.920
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
  
 0.920
Psed_0307
Cystathionine beta-lyase; KEGG: sen:SACE_3049 aminotransferase; PFAM: Aminotransferase, class I/classII.
 
  
0.917
Psed_1849
TIGRFAM: Asparagine synthase, glutamine-hydrolyzing; KEGG: sco:SCO0386 asparagine synthetase; PFAM: Asparagine synthase; Glycosyl transferase, group 1; Glutamine amidotransferase, class-II.
  
 
 0.917
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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