STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5466KEGG: nml:Namu_1442 hypothetical protein. (69 aa)    
Predicted Functional Partners:
glgB
1,4-alpha-glucan-branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.589
Psed_2878
Malto-oligosyltrehalose trehalohydrolase; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; TIGRFAM: Malto-oligosyltrehalose trehalohydrolase; KEGG: amd:AMED_2594 maltooligosyltrehalose trehalohydrolase; PFAM: Glycosyl hydrolase, family 13, catalytic domain; Glycoside hydrolase, family 13, N-terminal.
   
 0.581
Psed_1114
UvrD/REP helicase; KEGG: amd:AMED_1233 ATP-dependent DNA helicase; PFAM: DNA helicase, UvrD/REP type; Helicase/RNase D C-terminal, HRDC domain; SMART: Helicase/RNase D C-terminal, HRDC domain.
   
 
 0.576
Psed_5938
KEGG: tcu:Tcur_0280 glycoside hydrolase family 13 domain-containing protein.
   
 0.566
Psed_5484
Peptidase S15; KEGG: gob:Gobs_1832 peptidase S15.
   
 
 0.565
Psed_1879
TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: gob:Gobs_0418 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase.
  
  
 0.539
Psed_5467
PFAM: MaoC-like dehydratase; KEGG: svi:Svir_03560 acyl dehydratase.
       0.528
Psed_5468
KEGG: ami:Amir_6647 hypothetical protein.
       0.528
rpmG-2
TIGRFAM: Ribosomal protein L33; HAMAP: Ribosomal protein L33; KEGG: nfa:nfa51190 50S ribosomal protein L33; PFAM: Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
       0.516
Psed_0185
TIGRFAM: UDP-galactopyranose mutase; KEGG: svi:Svir_01310 UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase, C-terminal; FAD dependent oxidoreductase.
  
  
 0.454
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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