STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5487Helix-turn-helix domain protein; KEGG: sen:SACE_6312 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; Cupin 2, conserved barrel; SMART: Helix-turn-helix type 3. (196 aa)    
Predicted Functional Partners:
Psed_5488
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: stp:Strop_3403 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
    0.801
Psed_5386
KEGG: fri:FraEuI1c_4980 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; Cupin 2, conserved barrel; SMART: Helix-turn-helix type 3.
  
  
 0.623
Psed_6231
Cupin 2 conserved barrel domain protein; KEGG: cwo:Cwoe_2578 transcriptional regulator, XRE family; PFAM: Cupin 2, conserved barrel; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.
  
  
 0.609
Psed_1636
Cupin 2 conserved barrel domain protein; KEGG: bph:Bphy_6084 XRE family transcriptional regulator; PFAM: Cupin 2, conserved barrel; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.
 
   
 0.605
Psed_5489
PFAM: Domain of unknown function DUF336; KEGG: nfa:nfa26450 hypothetical protein.
       0.557
Psed_4071
KEGG: sgr:SGR_6537 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP03083, actinobacterial-type; PFAM: Domain of unknown function DUF1503.
  
 
 0.461
Psed_4407
KEGG: fre:Franean1_5043 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP03083, actinobacterial-type; PFAM: Domain of unknown function DUF1503.
  
 
 0.461
Psed_3336
PFAM: Protein of unknown function DUF664; KEGG: nfa:nfa32260 hypothetical protein.
  
   
 0.430
Psed_5490
KEGG: rha:RHA1_ro04719 hypothetical protein.
       0.427
Psed_3574
PFAM: Methyltransferase type 12; KEGG: msp:Mspyr1_25700 ribosomal protein L11 methylase.
     
 0.413
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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