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Psed_5501 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5501" - Short-chain dehydrogenase/reductase SDR in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5501Short-chain dehydrogenase/reductase SDR (263 aa)    
Predicted Functional Partners:
Psed_2539
3-oxoacyl-ACP reductase (277 aa)
   
          0.774
Psed_2605
3-oxoacyl-ACP reductase (264 aa)
   
          0.773
Psed_1484
3-oxoacyl-ACP reductase (258 aa)
   
          0.772
Psed_1459
3-oxoacyl-ACP reductase (280 aa)
   
          0.768
Psed_2584
3-oxoacyl-ACP reductase (249 aa)
   
          0.767
Psed_2274
3-oxoacyl-ACP reductase (264 aa)
   
          0.767
Psed_6331
LuxR family transcriptional regulator (431 aa)
   
          0.766
Psed_3718
3-oxoacyl-ACP reductase (274 aa)
   
          0.765
Psed_1361
3-oxoacyl-ACP reductase (305 aa)
   
          0.764
Psed_4193
3-oxoacyl-ACP reductase (249 aa)
   
          0.763
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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